STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0954Possible histone deacetylase or acetylpolyamine aminohydrolase or acetoin utilization protein. (309 aa)    
Predicted Functional Partners:
cobB-2
Sir2 family, possible ADP ribosyltransferase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
   
 
 0.924
mes-4
Nuclear protein SET; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.924
RPA0409
NAD binding site:Amine oxidase.
   
 0.866
RPA0034
Possible flavin containing amine oxidase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 0.865
RPA2218
Possible ATP-dependent RNA helicase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 0.838
RPA2211
DEAD/DEAH box helicase:Helicase, C-terminal.
   
 0.837
RPA4084
AAA ATPase; Belongs to the AAA ATPase family.
 
 0.826
RPA0369
Aminoacyl-tRNA synthetase, class I:ATP-binding region, ATPase-like.
   
 0.800
htpG
Heat shock protein HtpG; Molecular chaperone. Has ATPase activity.
   
 0.799
cbbX
cbbX protein homolog.
   
 0.796
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.