STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hupDHydrogenase maturation protein hupD. (217 aa)    
Predicted Functional Partners:
hupC
Ni/Fe-hydrogenase 1 B-type cytochrome subunit.
  
 0.992
hupS
Uptake hydrogenase regulatory protein hupV pseudogene, frameshifted; Authentic frameshift, hupV pseudogene.
 
  
 0.984
hupL
Hydrogenase large chain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.977
hupF
Hydrogenase expression/formation protein hupF.
 
  
 0.963
hupG
Putative hydrogenase expression/formation protein hupG; Belongs to the HupG/HyaE family.
 
  
 0.958
hupH
Hydrogenase expression/formation protein hupH; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.957
hupK
Putative hydrogenase expression/formation protein hupK.
 
 
 0.952
hypD
Hydrogenase expression/formation protein hypD; Belongs to the HypD family.
 
  
 0.923
hypE
Hydrogenase expression/formation protein hypE.
 
  
 0.917
hupI
Putative rubredoxin hupI; Belongs to the rubredoxin family.
 
  
 0.916
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.