STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hupFHydrogenase expression/formation protein hupF. (100 aa)    
Predicted Functional Partners:
hupD
Hydrogenase maturation protein hupD.
 
  
 0.964
hypD
Hydrogenase expression/formation protein hypD; Belongs to the HypD family.
  
 
 0.963
hupC
Ni/Fe-hydrogenase 1 B-type cytochrome subunit.
 
  
 0.947
hupS
Uptake hydrogenase regulatory protein hupV pseudogene, frameshifted; Authentic frameshift, hupV pseudogene.
 
 
 0.937
hupH
Hydrogenase expression/formation protein hupH; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.934
hypE
Hydrogenase expression/formation protein hypE.
  
 
 0.933
hupL
Hydrogenase large chain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.929
hupG
Putative hydrogenase expression/formation protein hupG; Belongs to the HupG/HyaE family.
 
  
 0.924
hupI
Putative rubredoxin hupI; Belongs to the rubredoxin family.
 
  
 0.921
hupK
Putative hydrogenase expression/formation protein hupK.
 
 
 0.918
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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