STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxATwo component sigma-54-dependent hydrogenase transcriptional regulator hoxA, Fis family. (482 aa)    
Predicted Functional Partners:
RPA0980
Sensor histidine kinase with a PAS domain.
 
 0.996
RPA0981
Sensor histidine kinase with multiple PAS and a response regulator receiver domain.
  
 
 0.875
hupS
Uptake hydrogenase regulatory protein hupV pseudogene, frameshifted; Authentic frameshift, hupV pseudogene.
 
  
 0.858
hupJ
Putative hydrogenase expression/formation protein hupJ.
 
     0.813
hupI
Putative rubredoxin hupI; Belongs to the rubredoxin family.
 
    0.806
hypC
Putative hypC.
  
   0.806
hupG
Putative hydrogenase expression/formation protein hupG; Belongs to the HupG/HyaE family.
 
  
 0.800
rpoN
RNA polymerase sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.796
hupH
Hydrogenase expression/formation protein hupH; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.793
hupK
Putative hydrogenase expression/formation protein hupK.
 
  
 0.786
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.