STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0980Sensor histidine kinase with a PAS domain. (450 aa)    
Predicted Functional Partners:
hoxA
Two component sigma-54-dependent hydrogenase transcriptional regulator hoxA, Fis family.
 
 0.996
hupU
Uptake hydrogenase accessory protein hupU.
 
 0.980
RPA1248
Two-component transcriptional regulator, LuxR family.
 
 
 0.941
RPA1681
Sensor histidine kinase with a response regulator receiver domain.
 
 
 0.939
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
 
 
0.931
hupJ
Putative hydrogenase expression/formation protein hupJ.
 
     0.922
RPA0853
Sensor histidine kinase, possible proline sensor PrlS; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.915
hupK
Putative hydrogenase expression/formation protein hupK.
 
  
 0.906
hupG
Putative hydrogenase expression/formation protein hupG; Belongs to the HupG/HyaE family.
 
  
 0.902
hupH
Hydrogenase expression/formation protein hupH; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.902
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.