Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA1005NUDIX hydrolase; Belongs to the Nudix hydrolase family. (216 aa)    
Predicted Functional Partners:
RPA1004
Hypothetical protein.
       0.556
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA; Belongs to the bacterial ribosomal protein bS20 family.
 
   
 0.537
RPA1006
Possible protocatechuate 4,5-dioxygenase small subunit (AB035121); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.509
RPA3567
Conserved hypothetical protein.
  
     0.489
mhpB
Possible 2,3-dihydroxyphenylpropionate 1,2-dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.485
RPA1832
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.449
RPA2750
Probable glycosyl transferase.
  
  
 0.431
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.405
RPA1035
Conserved hypothetical protein.
 
    0.404
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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