Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1015Transcriptional regulator, PadR family. (196 aa)    
Predicted Functional Partners:
RPA3699
Possible iron-chelator utilization protein.
   
 0.753
petA
Ubiquinol-cytochrome-c reductase, Rieske iron-sulfur protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
    0.638
RPA3789
Putative ATP-binding component of a transport system.
 
  
 0.548
RPA0682
Possible ABC transporter ATP-binding component, membrane bound.
  
  
 0.516
RPA4087
ABC-2 type transport system permease and double ATP-binding protein fusion.
  
  
 0.516
RPA1014
Conserved hypothetical protein.
       0.485
cobB-2
Sir2 family, possible ADP ribosyltransferase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.484
RPA0573
Putative ABC transporter (ATP-binding protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.428
nosF
Putative NosF protein (an ABC transporter).
  
  
 0.428
RPA3508
ATP-binding component of ABC transporter.
  
  
 0.428
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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