Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1078Probable transcriptional regulator, AraC family. (300 aa)    
Predicted Functional Partners:
RPA2404
Probable transcriptional regulator, AraC family.
 
 
 0.668
pchR
Putative transcriptional regulator PchR, AraC family.
  
     0.555
RPA0551
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
  
 0.547
RPA2222
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
  
 0.533
RPA0878
Transcriptional regulator, AraC type; possible DNA gyrase inhibitor.
 
     0.529
RPA1080
Possible 2-pyrone-4,6-dicarboxylate hydrolase.
  
    0.526
RPA3796
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
  
 0.525
RPA1077
Sua5/YciO/YrdC/YwlC protein family:SUA5 domain; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
  
    0.517
RPA1079
Probable 4-methylmuconolactone Major Facilitator Family (MFS) transporter.
  
    0.515
RPA1058
Probable transcriptional regulator, AraC family.
  
     0.482
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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