Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1085Hypothetical protein. (138 aa)    
Predicted Functional Partners:
csgG
Possible curli production assembly/transport component csgg precursor.
 
 
 0.988
csgG-2
Putative curli production assembly/transport component csgg precursor.
 
 
 0.968
RPA1082
Conserved hypothetical protein.
 
  
 0.887
csgB,
Possible minor curlin subunit precursor (fimbrin sef17 minor subunit).
  
  
 0.825
RPA1083
Conserved hypothetical protein.
       0.786
RPA3329
Conserved hypothetical protein.
 
  
 0.728
RPA1087
Possible transglycosylase SLT domain.
       0.651
RPA2614
Conserved hypothetical protein.
  
     0.429
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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