Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA1090Transcriptional regulatorn, Crp/Fnr family. (225 aa)    
Predicted Functional Partners:
RPA1091
Hypothetical protein.
 
     0.763
RPA3996
Probable transcriptional regulator, Crp/Fnr family.
  
   
 0.734
RPA3863
Transcriptional regulator, Crp/Fnr family.
  
   
 0.723
RPA2866
Pyruvate dehydrogenase E1 beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 
 0.720
RPA4422
Transcriptional regulator, Crp/Fnr family.
  
   
 0.697
nosR
Regulatory protein NosR.
  
  
 0.578
hbaR
Hydroxybenzoate anaerobic degradation regulatory protein HbaR, Crp/Fnr family.
  
     0.563
RPA1089
Hypothetical protein.
       0.491
aqpZ
Aquaporin Z (water channel); Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.489
RPA2291
Putative Adenylate/Guanylate cyclase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.447
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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