Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1112DGPF domain. (139 aa)    
Predicted Functional Partners:
phnB
Conserved hypothetical protein; COGs COG2764.
    0.918
RPA1108
DGPF domain.
 
    0.829
RPA1109
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family.
 
  
 0.822
RPA1282
Possible transcriptional regulator, ArsR family.
 
     0.545
RPA1116
RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family.
 
     0.533
RPA1111
Hypothetical protein.
       0.518
RPA4416
Conserved hypothetical protein.
 
    0.509
RPA1113
Probable transcriptional regulator, TetR family.
       0.501
RPA3869
Transcriptional regulator, XRE family.
  
     0.488
RPA3594
Conserved hypothetical protein; COGs COG0840.
  
     0.444
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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