STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA11774-oxalocrotonate tautomerase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the 4-oxalocrotonate tautomerase family. (67 aa)    
Predicted Functional Partners:
RPA3761
Putative catechol 2,3-dioxygenase.
  
 
 0.907
RPA3171
Conserved hypothetical protein; COGs COG1942; Belongs to the 4-oxalocrotonate tautomerase family.
   
 
  0.900
RPA4150
Conserved hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family.
     
  0.900
cbbG
Glyceraldehyde-3-phosphate dehydrogenase(GAPDH); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.722
hisS
Putative histidyl-tRNA synthetase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.556
RPA1176
Conserved hypothetical protein.
       0.516
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.