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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA1186Conserved hypothetical protein. (203 aa)    
Predicted Functional Partners:
RPA1187
NUDIX hydrolase.
      0.916
RPA1183
Conserved unknown protein.
 
     0.752
RPA1184
DUF58.
 
     0.729
RPA1188
Possible poly(A) polymerase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
     0.712
RPA1185
Putative methanol dehydrogenase regulator; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.701
RPA1182
Conserved hypothetical protein.
 
     0.637
aceA
Isocitrate lyase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.564
RPA4530
Conserved hypothetical protein; Belongs to the UPF0262 family.
  
     0.456
RPA1868
Conserved hypothetical protein; COGs COG2983; Belongs to the UPF0260 family.
  
     0.417
RPA0816
Putative acyl-CoA dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.412
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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