Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA1235Possible Leucine-Binding Protein (LBP); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (401 aa)    
Predicted Functional Partners:
RPA1231
Possible ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.947
RPA1230
Putative ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.945
RPA1232
Putative branched-chain amino acid transport system ATP-binding protein.
 
  
 0.917
RPA1233
Putative branched-chain amino acid transport system ATP-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.917
ilvM
Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.859
RPA3721
Possible ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.857
RPA1739
Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.819
RPA1740
Possible branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.777
ilvG
Putative high-affinity branched-chain amino acid transport system ATP-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.769
RPA1234
Possible long-chain-fatty-acid--CoA ligase.
 
    0.714
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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