Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
exbB1Putative biopolymer transport protein ExbB. (328 aa)    
Predicted Functional Partners:
exbD1
Biopolymer transport protein ExbD.
 
 
 0.982
RPA1241
Possible tonB transport protein.
 
 
 0.946
exbD3
Biopolymer transport protein ExbD/TolR.
 
 
 0.925
exbD5
exbD, uptake of enterochelin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.915
exbD
Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins.
 
 
 0.901
TolR
Putative tolR protein, uptake of enterochelin; tonB-dependent uptake of B colicins.
 
 
 0.898
RPA0155
Putative tolR/exbD protein.
 
 
 0.896
exbD2
Transport protein ExbD.
 
 
 0.802
pal
Omp16 protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.681
RPA3476
Possible energy transducer TonB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.680
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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