Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1243Hypothetical protein. (388 aa)    
Predicted Functional Partners:
RPA1245
Conserved hypothetical protein.
  
  
 0.900
RPA1244
Conserved unknown protein.
  
  
 0.796
RPA1246
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.749
rbn2
Ribonuclease BN.
  
    0.578
RPA1274
Possible Dps protein family starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
  
 0.464
RPA2755
Possible DNA-binding stress protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the Dps family.
  
  
 0.464
RPA4217
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the UPF0337 (CsbD) family.
  
  
 0.462
RPA4418
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the UPF0337 (CsbD) family.
  
  
 0.462
RPA4246
CBS domain:Transport-associated domain.
  
  
 0.440
ohr
Organic hydroperoxide resistance protein.
   
  
 0.429
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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