Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA1246Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (233 aa)    
Predicted Functional Partners:
RPA1245
Conserved hypothetical protein.
 
     0.968
RPA1244
Conserved unknown protein.
 
    0.959
rbn2
Ribonuclease BN.
 
    0.809
pufA
Light-harvesting complex 1 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
   
 
 0.756
RPA1243
Hypothetical protein.
       0.749
pufB
Light-harvesting complex 1 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
    
 
 0.734
pufL
Photosynthetic reaction center L subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
   
 
 0.726
pufM
Photosynthetic reaction center M protein; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
   
 
 0.726
RPA2039
Possible choline ABC transporter permease and substrate binding protein.
  
  
 0.691
RPA2074
Response regulator receiver (CheY-like protein).
  
     0.678
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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