STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA1254Putative ATP-binding component of ABC transporter. (229 aa)    
Predicted Functional Partners:
RPA1252
Putative high-affinity branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.992
RPA1251
Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.989
RPA1250
Amide-urea binding protein.
 
 
 0.978
RPA3667
Possible permease of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 0.951
RPA3669
Urea transport system substrate-binding protein; Citation: O'Hara et al. (1999) EMBO J. 18:5175-86 and Wilson et al. EMBO J. (1993) 12:3637-42; observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.935
RPA3668
Putative ABC transporter system permease component, possible fused protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.933
RPA3665
Possible ATP-binding component of ABC transporter.
  
 
 
0.905
RPA0573
Putative ABC transporter (ATP-binding protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
0.904
fmdA
Formamide amidohydrolase.
 
  
 0.897
fmdB
Putative formamidase regulatory protein FmdB.
 
    0.857
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.