Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1259Putative cation-transporting P-type ATPase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (914 aa)    
Predicted Functional Partners:
RPA1260
Universal stress protein (Usp); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.800
RPA3814
Calcium-binding EF-hand; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
 0.753
RPA4242
Conserved hypothetical protein; InterPro IPR001687 COGs COG2187.
 
    0.718
RPA0863
Possible MgtC-magnesium transport.
  
 
 0.634
RPA1936
Possible serine protease/outer membrane autotransporter.
   
 
 0.623
RPA4011
Possible serine protease/outer membrane autotransporter.
   
 
 0.623
RPA0919
ABC transporter, ATP-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.589
RPA2025
Possible MgtC Mg2+ transport protein.
  
 
 0.571
RPA2157
Conserved hypothetical protein.
   
  
 0.549
RPA2102
Conserved hypothetical protein.
   
  0.548
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (56%) [HD]