STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA1295Putative signal transduction histidine kinase. (403 aa)    
Predicted Functional Partners:
RPA4223
Response regulator receiver (CheY-like protein) with unknown domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.821
RPA2787
Putative signal transduction histidine kinase with PAS/PAC domain.
 
    0.660
RPA0007
Putative signal transduction histidine kinase with PAS/PAC domains.
 
  
 0.580
RPA2839
Response regulator receiver (CheY-like protein).
 
  
 0.547
RPA4225
RNA polymerase ECF-type sigma factor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.537
RPA2074
Response regulator receiver (CheY-like protein).
  
  
 0.530
RPA1294
Hypothetical protein.
  
    0.502
RPA4009
Putative signal transduction histidine kinase with GAF domain.
 
  
 0.479
RPA2075
Putative signal transduction histidine kinase with GAF and PAS/PAC domains.
  
 0.459
RPA1296
Putative diguanylate cyclase (GGDEF) with HAMP domain.
  
    0.455
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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