Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA1296Putative diguanylate cyclase (GGDEF) with HAMP domain. (587 aa)    
Predicted Functional Partners:
RPA1680
Putative response regulator and cylclic diguanylate phosphodiesterase (EAL).
 
  
 0.868
RPA3184
Putative cylclic diguanylate phosphodiesterase (EAL).
 
  
 0.825
vieA
Putative cylclic diguanylate phosphodiesterase (EAL).
 
  
 0.821
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
  
 
 0.799
RPA3170
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains.
 
 
0.762
RPA0145
Metal dependent phosphohydrolase with a response regulator receiver domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.749
RPA1681
Sensor histidine kinase with a response regulator receiver domain.
  
  
 0.742
RPA3316
Possible chemotaxis cheB/cheR fusion protein.
  
  
 0.685
RPA4830
Metal dependent phosphohydrolase with a response regulator receiver domain.
 
 
 0.674
RPA0494
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains.
 
 
 0.653
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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