STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cioBPossible cytochrome bd-I oxidase subunit I [EC:1.10.3.-]; 3 probable transmembrane helices predicted byTMHMM2.0. (341 aa)    
Predicted Functional Partners:
QxtA
Cytochrome bd-quinol oxidase subunit I.
 
 0.998
qxtB
Putative cytochrome bd-quinol oxidase subunit II.
  
  
0.911
sdhB
Succinate dehydrogenase iron-sulfur protein subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.600
sdhC
Succinate dehydrogenase membrane anchor/cytochrome b subunit.
     
 0.595
norE
Putative denitrification protein NorE.
  
  
 0.587
coxC
Cytochrome c oxidase subunit III.
  
  
 0.586
sdhA
Succinate dehydrogenase flavoprotein subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
 0.549
RPA1320
Conserved hypothetical protein; InterPro IPR001607.
  
  
 0.533
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
  
 0.523
RPA4452
Putative aromatic-L-amino-acid decarboxylase.
   
  
 0.507
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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