Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1357Conserved hypothetical protein. (171 aa)    
Predicted Functional Partners:
RPA1349
Hemolysin activation/secretion protein.
  
  
 0.858
RPA1355
Conserved hypothetical protein.
  
  
 0.841
RPA1354
Conserved hypothetical protein.
  
  
 0.830
exbB2
Putative transport protein ExbB2.
  
 
 0.815
RPA3855
Conserved hypothetical protein.
   
   0.738
RPA1358
Hypothetical protein.
       0.725
RPA1360
Hypothetical protein.
  
    0.721
RPA1359
Possible transglycosylase.
     
 0.711
RPA1356
PpiC-type peptidyl-prolyl cis-trans isomerase.
  
  
 0.709
exbD2
Transport protein ExbD.
  
 
 0.703
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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