STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxY1Putative sulfur oxidation protein. (156 aa)    
Predicted Functional Partners:
soxZ1
Putative sulfur oxidation protein.
 
 
 0.990
soxZ2
Putative sulfur oxidation protein soxZ; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.960
soxB
Sulfur/thiosulfate oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
 
 
 
 0.900
RPA4468
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.826
soxC
Sulfite dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.824
dhsU2
Putative flavocytochrome C sulfide dehydrogenase, flavoprotein subunit.
 
  
 0.809
dhsU1
Putative flavocytochrome C sulfide dehydrogenase, flavoprotein subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.807
RPA4463
Possible cytochrome; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.804
RPA4471
Conserved hypothetical protein; InterPro IPR006311:IPR006663 COGs COG2143.
 
  
 0.799
RPA4473
Conserved hypothetical protein; InterPro IPR006663.
 
   
 0.787
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.