Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA1368Conserved hypothetical protein; COGs COG0318. (196 aa)    
Predicted Functional Partners:
RPA0459
Possible fatty acid-CoA ligases.
 
     0.921
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
  
 0.758
hemN2
Possible oxygen-independent coproporphyrinogen III oxidase (hemN); Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
      0.629
RPA3445
Probable acetyl-CoA synthetase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.618
RPA1369
Conserved hypothetical protein; InterPro IPR004136 COGs COG2070.
  
  
 0.541
soxZ1
Putative sulfur oxidation protein.
       0.540
soxY1
Putative sulfur oxidation protein.
       0.540
RPA4592
Putative fatty acid metabolism AMP-binding protein.
  
     0.471
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
    
  0.466
RPA2556
PA-phosphatase related phosphoesterase.
    
 0.438
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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