Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vnfNPutative nitrogenase cofactor synthesis protein. (460 aa)    
Predicted Functional Partners:
vnfE
Putative nitrogenase cofactor synthesis protein; Belongs to the NifD/NifK/NifE/NifN family.
  
 0.997
vnfX
Putative vanadium nitrogenase protein.
 
 
 0.974
nifE
Nitrogenase molybdenum-cofactor synthesis protein nifE; Belongs to the NifD/NifK/NifE/NifN family.
  
 0.973
nifB1
Putative nitrogenase iron-molybdenum cofactor biosynthesis protein NifB.
  
 0.952
nifB2
Putative nitrogenase iron-molybdenum cofactor biosynthesis protein NifB.
  
 0.946
vnfD
Nitrogenase vanadium-iron protein alpha chain.
  
 0.937
nifD
Nitrogenase molybdenum-iron protein alpha chain, nifD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.919
vnfH
Nitrogenase iron protein, vnfH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
 
 0.897
nifH4
Nitrogenase iron protein, nifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
 
 0.897
nifB
Nitrogen fixation protein nifB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.894
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.