Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RPA1389Conserved hypothetical protein; InterPro IPR000276 COGs COG1840. (365 aa)    
Predicted Functional Partners:
RPA1391
Possible ABC transporter ATP-binding protein.
 
  
 0.953
RPA1390
Conserved hypothetical protein; InterPro IPR001687 COGs COG0378.
 
   
 0.949
RPA1388
Hypothetical protein.
 
    0.941
RPA1392
Nitroreductase family proteins.
 
    0.842
fpbB
Putative iron transport system permease protein.
  
  
 0.726
RPA1434
Conserved hypothetical protein.
  
     0.719
vnfD
Nitrogenase vanadium-iron protein alpha chain.
  
     0.716
RPA2614
Conserved hypothetical protein.
  
     0.707
RPA1385
Putative vanadium/vanadate transport system substrate-binding protein; Conserved in vnf operon of Azotobacter vinelandii.
 
   
 0.683
vnfK
Nitrogenase vanadium-iron protein, VnfK subunit; Belongs to the NifD/NifK/NifE/NifN family.
  
     0.680
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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