Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1391Possible ABC transporter ATP-binding protein. (347 aa)    
Predicted Functional Partners:
RPA1390
Conserved hypothetical protein; InterPro IPR001687 COGs COG0378.
  
 0.995
RPA1389
Conserved hypothetical protein; InterPro IPR000276 COGs COG1840.
 
  
 0.953
RPA1649
Predicted ABC-type transport systems, involved in lipoprotein release, permease components.
 
 
 0.861
RPA1388
Hypothetical protein.
 
  
 0.844
RPA2927
Possible ABC type permease; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.818
RPA1392
Nitroreductase family proteins.
 
   
 0.811
RPA1434
Conserved hypothetical protein.
  
    0.711
vnfD
Nitrogenase vanadium-iron protein alpha chain.
  
    0.659
anfD
Putative nitrogenase molybdenum-iron protein alpha chain (nitrogenase component I) (dinitrogenase).
  
    0.640
RPA0280
Unknown protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.620
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (44%) [HD]