Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA1392Nitroreductase family proteins. (182 aa)    
Predicted Functional Partners:
RPA1389
Conserved hypothetical protein; InterPro IPR000276 COGs COG1840.
 
    0.842
RPA1391
Possible ABC transporter ATP-binding protein.
 
   
 0.811
RPA1388
Hypothetical protein.
 
  
 0.806
RPA1390
Conserved hypothetical protein; InterPro IPR001687 COGs COG0378.
 
   
 0.804
RPA4155
3-oxoadipate CoA-transferase subunit B; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
     
 0.747
osmC
Osmotically inducible protein OsmC; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
     
 0.747
RPA1729
Fatty acid desaturase family.
     
 0.743
RPA1393
Conserved hypothetical protein; COGs COG3467.
  
  
 0.604
RPA0682
Possible ABC transporter ATP-binding component, membrane bound.
  
  
 0.545
RPA4087
ABC-2 type transport system permease and double ATP-binding protein fusion.
  
  
 0.545
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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