Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1395Possible trehalose/maltose binding protein. (522 aa)    
Predicted Functional Partners:
RPA1397
Putative sugar ABC transporter, permease protein.
 
 
 0.960
RPA1396
Possible multiple sugar transport system permease protein.
 
 
 0.939
RPA1398
Putative sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.895
RPA1399
Putative transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.887
glnAIII
Putative glutamine synthetase III.
 
    0.858
RPA1400
Possible Glutamine amidotransferase.
 
     0.729
RPA3468
Putative permease protein of sugar ABC transporter.
 
 
 0.674
RPA0128
Possible permease protein of sugar ABC transporter.
 
 
 0.652
RPA3469
Probable permease protein of sugar ABC transporter.
 
 
 0.651
RPA1402
Putative Glu-tRNA amidotransferase, subunit A; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the amidase family.
  
    0.649
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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