Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
RPA1489Two-component transcriptional regulator, LuxR family. (223 aa)    
Predicted Functional Partners:
RPA3018
Response regulator receiver:histidine kinase.
 
 0.970
phyB4
Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB4.
 
    0.933
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
 
 
 0.897
RPA1681
Sensor histidine kinase with a response regulator receiver domain.
 
 
 0.881
RPA1558
Sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain.
 
 
 0.616
RPA4753
Histidine kinase with a response regulator receiver domain.
 
 
 0.586
RPA3316
Possible chemotaxis cheB/cheR fusion protein.
   
 
 0.551
RPA0853
Sensor histidine kinase, possible proline sensor PrlS; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.535
RPA2107
Sensor histidine kinase with a GAF, a Ser/Thr protein kinase, and an unknown domain.
  
 
 0.525
RPA1314
Response regulator receiver (CheY-like protein).
 
  
 0.523
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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