Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phyB4Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB4. (770 aa)    
Predicted Functional Partners:
RPA1489
Two-component transcriptional regulator, LuxR family.
 
    0.933
RPA2076
Putative signal transduction histidine kinase.
     0.797
RPA3014
Two-component transcriptional regulator, LuxR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.751
RPA2787
Putative signal transduction histidine kinase with PAS/PAC domain.
     0.622
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
 
 
 
 0.602
RPA1681
Sensor histidine kinase with a response regulator receiver domain.
 
 
 
 0.566
kaiC
Circadian clock protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
 0.541
RPA1558
Sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain.
 
 
 
 0.532
RPA0583
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 
 0.499
RPA0494
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains.
 
 
 
 0.494
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.