Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tspOTryptophan-rich sensory protein. (154 aa)    
Predicted Functional Partners:
bchP
Geranylgeranyl reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.948
bchG
Geranylgeranyl bacteriochlorophyll synthase.
  
  
 0.941
RPA1531
Possible Bch2, light harvesting pigment Major Facilitator Family (MFS) transporter.
 
    0.881
ppsR1
Transcriptional regulator PpsR1; Fis family.
     
 0.817
RPA0297
Conserved hypothetical protein; InterPro IPR005265 COGs COG1981.
      
 0.751
RPA3179
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
  
 0.707
RPA1534
Hypothetical protein; InterPro IPR000408.
       0.703
pufL
Photosynthetic reaction center L subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
  
  
 0.667
pufB
Light-harvesting complex 1 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
     
 0.657
bchN
Protochlorophyllide reductase subunit BchN; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
  
 0.523
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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