Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA1591Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (131 aa)    
Predicted Functional Partners:
RPA1590
Conserved hypothetical protein.
       0.804
RPA1616
Conserved hypothetical protein.
  
     0.686
RPA3779
Conserved hypothetical protein; InterPro IPR000104:IPR005490 COGs COG1376.
  
     0.625
murI
Putative glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.621
fkbM
Possible methyltransferase, FkbM family.
 
 
   0.621
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
 
     0.558
RPA0249
Hypothetical protein; InterPro IPR000104:IPR000694.
  
     0.556
RPA0762
Possible oligopeptide ABC transporter, periplasmic binding protein component.
 
     0.555
RPA0912
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.552
RPA1704
Probable transcriptional regulator, TetR family.
 
  
 0.531
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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