Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA1605Conserved hypothetical protein; COGs COG1262. (419 aa)    
Predicted Functional Partners:
RPA1604
Conserved hypothetical protein.
  
 0.997
RPA1606
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glutaredoxin family. Monothiol subfamily.
  
    0.583
RPA1365
Putative sulfatase.
  
   0.558
RPA1990
Possible sulfatase.
  
   0.558
RPA1607
Appr-1''-p processing enzyme family protein homolog; CTG start codon; 64% identity to Bradyrhizobium japonicum Bll5710 protein.
  
    0.536
RPA1730
Possible hydrolase.
 
     0.445
RPA1599
Conserved hypothetical protein; COGs COG2343.
 
     0.441
RPA2039
Possible choline ABC transporter permease and substrate binding protein.
 
     0.441
RPA3200
Putative dual serine/threonine-protein kinase/phosphatase.
  
  
 0.439
gshA
Gamma-glutamylcysteine synthetase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
  
  
 0.418
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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