Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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RPA1648Membrane permeases, predicted cation efflux pumps; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (420 aa)    
Predicted Functional Partners:
RPA1649
Predicted ABC-type transport systems, involved in lipoprotein release, permease components.
 
  
 0.968
lolD1
Putative ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
  
 0.938
RPA1810
Putative outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.584
RPA2581
Putative outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 0.584
RPA1647
Putative esterase.
  
    0.558
RPA2054
Possible outer membrane protein precursor CzcC.
  
 
 0.538
RPA2373
Possible outer membrane protein.
  
 
 0.538
RPA2374
Hypothetical protein; COGs COG1538.
  
 
 0.538
RPA2572
Possible outer membrane efflux protein.
  
 
 0.538
oprN
Putative outer membrane efflux protein OprN precursor.
  
 
 0.538
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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