Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1657Putative diguanylate cyclase (GGDEF). (404 aa)    
Predicted Functional Partners:
RPA1680
Putative response regulator and cylclic diguanylate phosphodiesterase (EAL).
  
 0.981
RPA3184
Putative cylclic diguanylate phosphodiesterase (EAL).
  
 0.981
RPA0145
Metal dependent phosphohydrolase with a response regulator receiver domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.853
vieA
Putative cylclic diguanylate phosphodiesterase (EAL).
 
  
 0.831
RPA4830
Metal dependent phosphohydrolase with a response regulator receiver domain.
 
 
 0.743
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
  
 
 0.576
prfB
Translation peptide releasing factor RF-2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
  
    0.560
RPA3170
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS and GAF domains.
 
 
0.549
RPA0521
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL).
 
0.481
RPA0529
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
0.476
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.