Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bchEMg-protoporphyrin IX monomethyl ester oxidative cyclase 66kD subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (565 aa)    
Predicted Functional Partners:
bchJ
Putative 4-vinyl protochlorophyllide reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.999
bchM
Mg-protoporphyrin IX methyl transferase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.963
bchF
Possible 2-vinyl bacteriochlorophillide hydratase BchF subunit (AB034704).
 
  
 0.933
acsF
Conserved unknown protein; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.
  
 
 0.921
bchG
Geranylgeranyl bacteriochlorophyll synthase.
 
  
 0.913
hemN1
Putative coproporphyrinogen oxidase III; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.894
bchC
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.823
puhA
H subunit of photosynthetic reaction center complex; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.812
bchP
Geranylgeranyl reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.787
bchZ
Bacteriochlorophyllide reductase subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.773
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (70%) [HD]