Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1679Unknown protein. (104 aa)    
Predicted Functional Partners:
cheR3
Chemotaxis methyltransferase, CheR3; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.795
cheA3
Multidomain chemotaxis histidine kinase CheA3 (Hpt, CheA, CheW, & Resp. Reg. Rec. domains); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.589
cheW3
Chemotaxis signal transduction/oligomerization protein CheW3; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.589
RPA1680
Putative response regulator and cylclic diguanylate phosphodiesterase (EAL).
  
    0.507
RPA3912
Hypothetical protein.
   
    0.457
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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