Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA1682Ptwo-component transcriptional regulator, LuxR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (208 aa)    
Predicted Functional Partners:
RPA3316
Possible chemotaxis cheB/cheR fusion protein.
  
 
 0.925
RPA1313
Sensor histidine kinase with multiple PAS/PAC domains.
 
 
 0.820
RPA2292
Sensor histidine kinase.
 
 
 0.786
RPA1556
Phosphotransfer protein with response regulator receiver and Hpt domains.
 
   
 0.739
cheR1
Chemotaxis methyltransferase, CheR1; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
      0.723
fixL
Two component low oxygen sensor histidine kinase with PAS domains, fixL; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.722
RPA4738
Response regulator receiver (CheY-like protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.647
RPA4140
Sensor histidine kinase with a PAS domain.
 
 
 
 0.639
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
 
 
 0.592
RPA0981
Sensor histidine kinase with multiple PAS and a response regulator receiver domain.
 
 
 0.570
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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