STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA1685Possible serine protease/outer membrane autotransporter. (1366 aa)    
Predicted Functional Partners:
RPA1349
Hemolysin activation/secretion protein.
  
  
 0.704
RPA1337
Conserved hypothetical protein.
 
  
 0.661
RPA1354
Conserved hypothetical protein.
  
     0.625
RPA1336
Conserved hypothetical protein; InterPro IPR000104:IPR000515.
 
  
 0.624
exbB2
Putative transport protein ExbB2.
 
   
 0.611
RPA1341
Conserved hypothetical protein; InterPro IPR000104:IPR001687:IPR003439.
 
  
 0.602
RPA1353
Conserved hypothetical protein; InterPro IPR000694.
  
   
 0.564
RPA3857
Possible esterase/lipase/outer membrane autotransporter.
  
   
 0.562
RPA1345
Conserved hypothetical protein.
  
  
 0.517
RPA0842
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.459
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.