Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA1697Competence-damaged protein; Belongs to the CinA family. (180 aa)    
Predicted Functional Partners:
cinA
Possible competence-damaged protein; Belongs to the CinA family.
  
     0.760
RPA1698
DUF81.
       0.588
nadE
NH3-dependent NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.502
RPA1756
Possible acetyl-CoA acetyltransferase.
  
    0.484
pgsA
Possible CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.466
RPA3050
CDP-alcohol phosphatidyltransferase.
  
  
 0.466
RPA4824
Conserved hypothetical protein.
 
     0.459
rpsP,
Ribosomal protein S16; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.455
RPA1699
Putative acyl-CoA dehydrogenase.
  
    0.418
RPA1762
Putative acyl-CoA dehydrogenase.
  
    0.405
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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