Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
RPA1720Conserved hypothetical protein; COGs COG3576. (206 aa)    
Predicted Functional Partners:
vanB
Putative vanillate O-demethylase oxidoreductase.
 
    0.911
RPA1106
Conserved hypothetical protein; COGs COG3558.
     0.880
RPA1721
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.642
RPA1696
Conserved hypothetical protein; COGs COG3576.
  
    0.619
RPA1719
Protein of unknown function UPF0153.
       0.596
alkB
Alkylated DNA repair protein.
       0.556
pdxK
Putative pyridoxamine kinase; Citation: Yang et al. (1996) FEMS Microbiol. Lett. 141:89-95; Belongs to the pyridoxine kinase family.
   
 
  0.512
RPA3451
Possible transcriptional regulator, TetR family.
  
     0.442
RPA0687
Conserved hypothetical protein; COGs COG3576.
  
     0.404
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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