Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
alkBAlkylated DNA repair protein. (216 aa)    
Predicted Functional Partners:
RPA1721
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.773
oxlT
Possible oxalate/formate antiporter.
     
 0.748
hppA
H+ translocating pyrophosphate synthase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.
      
 0.741
panE1
Ketopantoate reductase ApbA/PanE; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.626
panE
Putative ketopantoate reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
    0.626
apbA/panE
Putative 2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.626
mgtE
Putative magnesium transporter; Acts as a magnesium transporter.
    
 0.589
RPA1720
Conserved hypothetical protein; COGs COG3576.
       0.556
ogt
Possible Ada polyprotein (O6-methylguanine-DNA methyltransferase).
 
  
 0.511
RPA1719
Protein of unknown function UPF0153.
 
     0.507
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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