Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ragDPossible cation/heavy metal efflux pump, HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (400 aa)    
Predicted Functional Partners:
ragC
Putative cation efflux system protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.996
mexF
Putative RND multidrug efflux transporter MexF; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.844
mexD2
RND multidrug efflux transporter MexD.
 
 0.831
mexD2-2
RND multidrug efflux transporter MexD.
 
 0.827
RPA0096
Putative multidrug-efflux transport protein.
 
 0.820
RPA4095
Putative multidrug-efflux transport protein mexF.
 
 0.820
mexD3
RND multidrug efflux transporter MexD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.819
mexB
RND multidrug efflux transporter MexB.
 
 0.796
RPA4680
Putative efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.793
RPA1021
Putative transporter, AcrB/D/F family; Cation efflux system protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.773
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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