Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA1783Possible TrapT family, dctQ subunit, C4-dicarboxylate transport. (217 aa)    
Predicted Functional Partners:
RPA1784
TrapT family, dctM subunit, C4-dicarboxylate transport.
  
 
 0.970
dctQ2
TrapT dctQ-M fusion permease, dicarboxylate transport.
  
 0.943
RPA1782
TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.929
RPA2542
Possible TrapT family, dctQ subunit, C4-dicarboxylate transport.
   
 
  0.925
RPA4555
Possible TrapT family, dctQ subunit, C4-dicarboxylate transport.
   
 
  0.902
RPA1977
Possible TrapT family, dctQ subunit, glutamate transport; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
  0.900
dctQ1
Possible TrapT family, dctQ subunit, C4-dicarboxylate transport.
     
 0.900
RPA1785
Conserved hypothetical protein; Belongs to the UPF0311 family.
  
    0.630
RPA4693
Putative FMN oxidoreductase.
   
    0.550
dctM2
TrapT family, dctM subunit, C4-dicarboxylate transport.
  
 
 0.531
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (56%) [HD]