Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fcs2Putative feruloyl-CoA synthetase. (632 aa)    
Predicted Functional Partners:
RPA1786
Putative 3-hydroxybutyryl-CoA dehydratase.
 
 
 0.965
RPA1788
Possible 4-hydroxybenzoyl-CoA thioesterase.
 
  
 0.833
phbH
4-hydroxybenzoate hydroxylase (4-hydroxybenzoate-3-monooxygenase).
 
   
 0.801
RPA4198
Amidohydrolase 2; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.772
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
  
 0.758
RPA1785
Conserved hypothetical protein; Belongs to the UPF0311 family.
 
   
 0.755
RPA1794
Transcriptional regulator, MarR family.
  
  
 0.754
RPA0676
Possible enoyl-CoA hydratase/isomerase family member.
 
 
   0.692
RPA0677
Hypothetical protein.
  
   
 0.672
RPA0675
Possible hydrolases (alpha/beta hydrolase superfamily).
 
 
   0.657
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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