Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GTA-9Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg13 (37% identity). (303 aa)    
Predicted Functional Partners:
GTA-8
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg12.
 
 
 
 0.979
RPA1912
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg15.
 
 
   0.971
GTA-4
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg9 (56% identity).
 
 
   0.965
GTA-3
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg8 (32% identity).
 
 
   0.952
RPA1888
Putative major capsid protein, R. capsulatus GTA orfg5 homologue; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.948
GTA-10
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg14.
 
     0.946
RPA1885
Putative portal protein, R. capsulatus GTA orfg3 homologue.
 
   0.945
GTA
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg6 (21% idenity).
 
 
 
 0.938
RPA1913
Conserved hypothetical protein.
 
 
   0.929
GTA-7
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg11.
 
    0.891
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.