STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA1911Nickel-dependent hydrogenase b-type cytochrome subunit. (181 aa)    
Predicted Functional Partners:
RPA2458
Putative cytochrome b561.
  
    0.723
RPA2306
Nickel-dependent hydrogenase b-type cytochrome subunit.
  
    0.712
RPA0507
Possible cytochrome b561.
  
    0.711
RPA1910
Conserved hypothetical protein; InterPro IPR001687.
  
    0.704
RPA1909
Transcriptional regulator, MarR family.
  
    0.701
RPA4284
YceI like family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the UPF0312 family.
 
  
 0.529
RPA1908
Hypothetical protein.
  
    0.479
RPA1913
Conserved hypothetical protein.
  
    0.473
RPA1912
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg15.
       0.472
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.