Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA1913Conserved hypothetical protein. (455 aa)    
Predicted Functional Partners:
RPA1912
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg15.
 
 
   0.967
GTA-8
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg12.
 
 
   0.929
GTA-9
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg13 (37% identity).
 
 
   0.929
RPA1885
Putative portal protein, R. capsulatus GTA orfg3 homologue.
 
 0.926
GTA-4
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg9 (56% identity).
 
   0.923
RPA1888
Putative major capsid protein, R. capsulatus GTA orfg5 homologue; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   0.916
GTA
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg6 (21% idenity).
 
 
   0.905
GTA-7
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg11.
 
  
 0.888
GTA-3
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg8 (32% identity).
 
   0.881
GTA-10
Homologue of Rhodobacter capsulatus gene transfer agent (GTA) orfg14.
 
  
 0.870
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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